Software and data products
R packages
General-use
birdsize
Functions to simulate size measurements for real or imagined bird populations.
feasiblesads
Draw samples from the feasible set for a species abundance distribution.
portalr
Tools to download & access summaries of data from the Portal Project.
MATSS
Macroecological Analysis of Time-series Structure. Load numerous ecological timeseries datasets in a standardized format, and build flexible piplines using drake or similar packages.
LDATS
Combines Latent Dirichlet Allocation with Bayesian changepoint-analysis of time-series to detect rapid transitions in ecological community composition. Building on the analysis in Christensen et al. 2018.
roleR
(In dev.) Implementation of joint ecological and population genetic models in R/RCpp. See the RoLE Model website.
roleShiny
(In dev.) Graphical user interface for the RoLE Model.
Manuscript support
These packages/research compendia are tailored to reproduce the analyses associated with my first-author manuscripts.
birds-geb-2023
Research compendium containing code supporting the manuscript Diaz and Ernest (accepted, Global Ecology and Biogeography).
soar
R package containing functions supporting the analyses in Diaz and Ernest (2022) in Ecology.
scadsanalysis
Research compendium containing the analyses in Diaz, Ye, and Ernest (2021) in Ecology Letters.
Data products
PortalData
Partially automated system for quality assurance and open-access to regularly-updated data on desert rodents, plants, and weather associated with the Portal Project. See the paper describing the workflow and accompanying data paper hosted on bioRxiv.